Package: rr2 1.1.1

rr2: R2s for Regression Models

Three methods to calculate R2 for models with correlated errors, including Phylogenetic GLS, Phylogenetic Logistic Regression, Linear Mixed Models (LMMs), and Generalized Linear Mixed Models (GLMMs). See details in Ives 2018 <doi:10.1093/sysbio/syy060>.

Authors:Anthony Ives [aut, cre], Daijiang Li [ctb]

rr2_1.1.1.tar.gz
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rr2_1.1.1.tgz(r-4.4-any)rr2_1.1.1.tgz(r-4.3-any)
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rr2.pdf |rr2.html✨
rr2/json (API)
NEWS

# Install 'rr2' in R:

install.packages('rr2', repos = c('https://arives.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/arives/rr2/issues

On CRAN:

6.35 score 18 stars 1 packages 67 scripts 3.1k downloads 4 mentions 9 exports 51 dependencies

Last updated 1 years agofrom:674328962f. Checks:OK: 3 NOTE: 4. Indexed: yes.

Target	Result	Date
Doc / Vignettes	OK	Nov 19 2024
R-4.5-win	NOTE	Nov 19 2024
R-4.5-linux	NOTE	Nov 19 2024
R-4.4-win	NOTE	Nov 19 2024
R-4.4-mac	NOTE	Nov 19 2024
R-4.3-win	OK	Nov 19 2024
R-4.3-mac	OK	Nov 19 2024

Exports:binaryPGLMM inv.logit partialR2 partialR2adj R2 R2_lik R2_pred R2_resid transf_phy

Dependencies:ape boot cli codetools cpp11 deldir digest dplyr fansi future future.apply generics globals glue gridExtra gtable interp jpeg lattice latticeExtra lifecycle listenv lme4 magrittr MASS Matrix minqa mvtnorm nlme nloptr parallelly phylolm phyr pillar pkgconfig png purrr R6 RColorBrewer Rcpp RcppArmadillo RcppEigen rlang stringi stringr tibble tidyr tidyselect utf8 vctrs withr

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Phylogenetic GLM for binary data	binaryPGLMM
Invert logit function	inv.logit
Partial R2	partialR2
Adjusted partial R2	partialR2adj
Calculate R2_lik, R2_resid, and R2_pred	R2
Calculate R2_lik	R2_lik
Calculate R2_pred	R2_pred
Calculate R2_resid	R2_resid
rr2: An R package to calculate R2s for regression models	rr2-package rr2
Transform a phylogeny based on a phylolm model	transf_phy