{ "_id": "6ac21924773a0037682c1f3b", "Package": "rr2", "Type": "Package", "Title": "R2s for Regression Models", "Version": "1.1.1", "Authors@R": "c(\nperson(\"Anthony\", \"Ives\", , \"arives@wisc.edu\", c(\"aut\", \"cre\")),\nperson(\"Daijiang\", \"Li\", , \"daijianglee@gmail.com\", role = \"ctb\"))", "Description": "Three methods to calculate R2 for models with correlated\nerrors, including Phylogenetic GLS, Phylogenetic Logistic\nRegression, Linear Mixed Models (LMMs), and Generalized Linear\nMixed Models (GLMMs). See details in Ives 2018\n.", "License": "GPL-3", "Encoding": "UTF-8", "RoxygenNote": "7.2.3", "URL": "https://github.com/arives/rr2", "BugReports": "https://github.com/arives/rr2/issues", "Config/pak/sysreqs": "cmake make libicu-dev libjpeg-dev libpng-dev", "Repository": "https://arives.r-universe.dev", "Date/Publication": "2023-08-19 22:44:46 UTC", "RemoteUrl": "https://github.com/arives/rr2", "RemoteRef": "HEAD", "RemoteSha": "674328962f28240fabdd3c9282416367bbc228ff", "NeedsCompilation": "no", "Packaged": { "Date": "2026-10-04 09:05:18 UTC", "User": "root" }, "Author": "Anthony Ives [aut, cre],\nDaijiang Li [ctb]", "Maintainer": "Anthony Ives ", "_user": "arives", "_type": "src", "_file": "rr2_1.1.1.tar.gz", "_fileid": "https://r2.ropensci.org/c690d2e6871ec94ebfd3a0d1779d35a453799bf60f85ba287b98dfcb4a59ecb6", "_filesize": 239340, "_sha256": "c690d2e6871ec94ebfd3a0d1779d35a453799bf60f85ba287b98dfcb4a59ecb6", "_expires": "2027-01-12T09:15:14.000Z", "_created": "2026-10-04T09:05:18.000Z", "_published": "2026-10-04T09:15:16.431Z", "_jobs": [ { "job": 111403064406, "time": 146, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "NOTE", "artifact": "11299506421" }, { "job": 111403064448, "time": 133, "config": "linux-release-x86_64", "r": "4.6.1", "check": "NOTE", "artifact": "11298518538" }, { "job": 111403064439, "time": 196, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "NOTE", "artifact": "11298963129" }, { "job": 111403064460, "time": 197, "config": "macos-release-arm64", "r": "4.6.1", "check": "NOTE", "artifact": "11299002674" }, { "job": 111402600257, "time": 166, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "11298917306" }, { "job": 111403064438, "time": 120, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "11299007252" }, { "job": 111403064450, "time": 120, "config": "windows-devel-x86_64", "r": "4.7.0", "check": "NOTE", "artifact": "11299066199" }, { "job": 111403064465, "time": 96, "config": "windows-oldrel-x86_64", "r": "4.5.3", "check": "NOTE", "artifact": "11298696797" }, { "job": 111403064441, "time": 100, "config": "windows-release-x86_64", "r": "4.6.1", "check": "NOTE", "artifact": "11298682921" } ], "_host": "GitHub-Actions", "_buildurl": "https://github.com/r-universe/arives/actions/runs/37190863615", "_status": "success", "_upstream": "https://github.com/arives/rr2", "_commit": { "id": "674328962f28240fabdd3c9282416367bbc228ff", "author": "daijiang ", "committer": "daijiang ", "message": "update citation file\n", "time": 1692485086 }, "_maintainer": { "name": "Anthony Ives", "email": "arives@wisc.edu", "login": "arives", "description": "", "uuid": 11632428 }, "_distro": "resolute", "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 3.0", "role": "Depends" }, { "package": "stats", "role": "Depends" }, { "package": "lme4", "role": "Imports" }, { "package": "phylolm", "version": ">= 2.6.2", "role": "Imports" }, { "package": "ape", "role": "Imports" }, { "package": "utils", "role": "Imports" }, { "package": "Matrix", "role": "Imports" }, { "package": "nlme", "role": "Imports" }, { "package": "phyr", "version": ">= 1.0.3", "role": "Imports" }, { "package": "testthat", "role": "Suggests" }, { "package": "mvtnorm", "role": "Suggests" } ], "_owner": "arives", "_selfowned": true, "_usedby": 1, "_updates": [], "_tags": [], "_stars": 17, "_contributors": [ { "user": "arives", "count": 114, "uuid": 11632428 }, { "user": "daijiang", "count": 35, "uuid": 1696911 } ], "_userbio": { "uuid": 11632428, "type": "user", "name": "Anthony R. Ives", "followers": 15 }, "_downloads": { "count": 9105, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/rr2" }, "_mentions": 4, "_devurl": "https://github.com/arives/rr2", "_searchresults": 118, "_rbuild": "4.6.1", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/manual.pdf", "extra/NEWS.html", "extra/NEWS.txt", "extra/readme.html", "extra/readme.md", "extra/rr2.html" ], "_homeurl": "https://github.com/arives/rr2", "_realowner": "arives", "_cranurl": true, "_releases": [ { "version": "1.0.0", "date": "2018-11-04" }, { "version": "1.0.1", "date": "2019-02-04" }, { "version": "1.0.2", "date": "2019-05-09" }, { "version": "1.1.0", "date": "2022-11-18" }, { "version": "1.1.1", "date": "2023-08-21" } ], "_exports": [ "binaryPGLMM", "inv.logit", "partialR2", "partialR2adj", "R2", "R2_lik", "R2_pred", "R2_resid", "transf_phy" ], "_help": [ { "page": "binaryPGLMM", "title": "Phylogenetic GLM for binary data", "topics": [ "binaryPGLMM" ] }, { "page": "inv.logit", "title": "Invert logit function", "topics": [ "inv.logit" ] }, { "page": "partialR2", "title": "Partial R2", "topics": [ "partialR2" ] }, { "page": "partialR2adj", "title": "Adjusted partial R2", "topics": [ "partialR2adj" ] }, { "page": "R2", "title": "Calculate R2_lik, R2_resid, and R2_pred", "topics": [ "R2" ] }, { "page": "R2_lik", "title": "Calculate R2_lik", "topics": [ "R2_lik" ] }, { "page": "R2_pred", "title": "Calculate R2_pred", "topics": [ "R2_pred" ] }, { "page": "R2_resid", "title": "Calculate R2_resid", "topics": [ "R2_resid" ] }, { "page": "rr2", "title": "rr2: An R package to calculate R2s for regression models", "topics": [ "rr2-package", "rr2" ] }, { "page": "transf_phy", "title": "Transform a phylogeny based on a phylolm model", "topics": [ "transf_phy" ] } ], "_readme": "https://github.com/arives/rr2/raw/HEAD/README.md", "_rundeps": [ "ape", "boot", "cli", "codetools", "cpp11", "deldir", "digest", "dplyr", "future", "future.apply", "generics", "globals", "glue", "gridExtra", "gtable", "interp", "jpeg", "lattice", "latticeExtra", "lifecycle", "listenv", "lme4", "magrittr", "MASS", "Matrix", "minqa", "mvtnorm", "nlme", "nloptr", "parallelly", "phylolm", "phyr", "pillar", "pkgconfig", "png", "purrr", "R6", "rbibutils", "RColorBrewer", "Rcpp", "RcppArmadillo", "RcppEigen", "Rdpack", "reformulas", "rlang", "stringi", "stringr", "tibble", "tidyr", "tidyselect", "utf8", "vctrs", "withr" ], "_score": 7.039762129198983, "_indexed": true, "_nocasepkg": "rr2", "_universes": [ "arives" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.1.1", "date": "2026-10-04T09:07:21.000Z", "distro": "resolute", "commit": "674328962f28240fabdd3c9282416367bbc228ff", "fileid": "https://r2.ropensci.org/6ba4590cc60dba2c3ae00a0e3ff0de1fe2ff71114c0caf780cff2368433096c5", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/arives/actions/runs/37190863615" }, { "r": "4.6.1", "os": "linux", "version": "1.1.1", "date": "2026-10-04T09:07:16.000Z", "distro": "resolute", "commit": "674328962f28240fabdd3c9282416367bbc228ff", "fileid": "https://r2.ropensci.org/930b3031530d6cb943f2381ea89bd7c1d7541f61f1595c63b16ff6b41d606929", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/arives/actions/runs/37190863615" }, { "r": "4.5.3", "os": "mac", "version": "1.1.1", "date": "2026-10-04T09:13:33.000Z", "commit": "674328962f28240fabdd3c9282416367bbc228ff", "fileid": "https://r2.ropensci.org/88456248a6837d2b59d963e2f84533dc2017ad091bf484ae7f0a2cf87ebb47c1", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/arives/actions/runs/37190863615" }, { "r": "4.6.1", "os": "mac", "version": "1.1.1", "date": "2026-10-04T09:09:56.000Z", "commit": "674328962f28240fabdd3c9282416367bbc228ff", "fileid": "https://r2.ropensci.org/f22a5b9b2b781f012a3229a439ad9e2a6756316e0a34d88debfb5ae2516546e9", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/arives/actions/runs/37190863615" }, { "r": "4.6.0", "os": "wasm", "version": "1.1.1", "date": "2026-10-04T09:07:35.000Z", "commit": "674328962f28240fabdd3c9282416367bbc228ff", "fileid": "https://r2.ropensci.org/42ba3cb85d713763a45fa18bbf7e5480dee77d8616aa31c6a2d62b0458b6f295", "status": "success", "buildurl": "https://github.com/r-universe/arives/actions/runs/37190863615" }, { "r": "4.7.0", "os": "win", "version": "1.1.1", "date": "2026-10-04T09:06:34.000Z", "commit": "674328962f28240fabdd3c9282416367bbc228ff", "fileid": "https://r2.ropensci.org/5fff9f34d9b04b28a12da335814becb9499b0f643dc064f6c0f9df306a085ff0", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/arives/actions/runs/37190863615" }, { "r": "4.5.3", "os": "win", "version": "1.1.1", "date": "2026-10-04T09:06:25.000Z", "commit": "674328962f28240fabdd3c9282416367bbc228ff", "fileid": "https://r2.ropensci.org/c33751d27922ca72bb3bc59378653928f15b62b4dbf06fbb65e7b5d5beb92c29", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/arives/actions/runs/37190863615" }, { "r": "4.6.1", "os": "win", "version": "1.1.1", "date": "2026-10-04T09:06:33.000Z", "commit": "674328962f28240fabdd3c9282416367bbc228ff", "fileid": "https://r2.ropensci.org/1b1db5b251c991fae4a14614d82371e1731bb6ccb04b8ea2a6c23f70e28eec27", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/arives/actions/runs/37190863615" } ] }